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Table 1 Summary of differential splicing analysis software

From: A survey of software for genome-wide discovery of differential splicing in RNA-Seq data

  Model Precision Sensitivity Pair end Multicores Novel events Visualization User-friendly URL Ref
Cuffdiff 2 Isoform ? ? [24] [25]
MISO Isoform ? ? [26] [27]
DEXSeq Exon ? ? [28] [29]
DSGseq Exon ? ? [30] [31]
MATS Junction + exon ☺☺ ? [32] [33]
DiffSplice Junction + exon ? ? ☺☺ [34] [35]
Splicing compass Gene ? ? ~ ~ [36] [37]
AltAnalyze (microarray) Junction + exon ☺☺ [38] [39]
  1. Excellent (☺☺), very good (☺), good (~), could be improved (), unknown (?), multi-cores (supports use of multiple cores to speed computations).