Table 2 Top 0.1 % SNPs that are highly differentiated between the Malays from northern and southern region of Peninsular (total SNP = 42633)

rs4149264

9

107,677,211

C

0.2256

0.4856

0.1682

ABCA1

intronic

rs10102377

8

83,762,822

T

0.2251

0.4097

0.2336

rs4148475

13

95,853,574

A

0.2242

0.4676

0.184

ABCC4

intronic

rs1056836

2

38,298,203

G

0.2037

0.4757

0.1934

CYP1B1

coding

rs1126965

17

70,642,790

G

0.1931

0.5

0.1822

SLC39A11

3utr

rs17769090

15

70,630,120

A

0.1636

0.4648

0.2381

rs6974363

7

47,633,187

G

0.1421

0.493

0.2333

rs837395

1

47,269,338

A

0.1400

0.4897

0.2383

CYP4B1

intronic

rs4646430

2

38,306,415

G

0.1384

0.4621

0.1981

rs215101

16

16,052,973

G

0.1206

0.4752

0.271

ABCC1

intronic

rs12920607

16

73,728,620

C

0.1183

0.475

0.2736

rs837398

1

47,266,422

A

0.1124

0.4897

0.2664

CYP4B1

intronic

rs809367

10

89,741,806

A

0.1088

0.4307

0.2009

rs316133

6

52,847,551

C

0.0957

0.4823

0.2594

GSTA4

intronic

rs6130511

20

42,681,088

A

0.0916

0.2801

0.1

TOX2

intronic

rs2132845

4

140,587,125

T

0.0910

0.4255

0.215

MGST2

5utr

rs5761313

22

26,313,745

T

0.0887

0.4964

0.2804

MYO18B

intronic

rs10485805

20

54,945,783

G

0.0853

0.4397

0.2336

AURKA

intronic

rs10489142

1

7,363,310

G

0.0835

0.4507

0.3364

CAMTA1

intronic

rs2274928

13

24,044,546

A

0.0779

0.3601

0.4346

LINC00327

intronic

rs11935505

4

145,226,422

A

0.0758

0.04643

0.1682

rs1566869

12

52,266,348

A

0.0695

0.3406

0.1682

rs1884897

20

6,612,832

G

0.0695

0.2812

0.1215

rs4530975

7

104,415,415

T

0.0679

0.1862

0.05607

LHFPL3

intronic

rs6024831

20

54,938,464

G

0.0675

0.4161

0.3915

FAM210B

intronic

rs1160798

6

112,438,446

C

0.0661

0.06897

0.1934

LAMA4

intronic

rs2158196

4

114,416,596

C

0.0658

0.2391

0.09434

CAMK2D

intronic

rs16961766

13

103,899,499

A

0.0645

0.3143

0.1524

rs10962015

9

15,387,949

A

0.0638

0.2482

0.1028

rs6884962

5

172,682,382

A

0.0623

0.4896

0.3271

rs17126776

12

39,311,625

A

0.0603

0.1759

0.3318

rs2755209

13

41,137,804

C

0.0602

0.25

0.1075

FOXO1

intronic

rs9783586

13

108,361,559

T

0.0601

0.2671

0.4393

FAM155A

intronic

rs10968093

9

27,753,227

A

0.0594

0.06338

0.1776

rs2458286

8

103,978,699

T

0.0591

0.4424

0.3774

rs4875364

8

4,444,592

C

0.0583

0.3094

0.1557

CSMD1

intronic

rs11145506

9

80,264,584

T

0.0578

0.3821

0.217

GNA14

intronic

rs11604366

11

28,887,766

C

0.0577

0.2695

0.4387

rs9881633

3

112,881,539

T

0.0574

0.3

0.472

RP11_572M11.3

intronic

rs5762448

22

28,408,444

C

0.0573

0.3514

0.1916

TTC28

intronic

rs6467991

7

83,954,737

C

0.0570

0.344

0.4811

rs10089677

8

122,660,248

A

0.0569

0.2329

0.09813

rs1923254

13

41,084,241

G

0.0567

0.3776

0.2143

rs7813806

8

5,142,665

C

0.0567

0.2817

0.1355

rs7625411

3

112,811,428

A

0.0564

0.3403

0.486

rs2922249

6

127,954,614

C

0.0564

0.09441

0.2196

rs2294088

8

124,526,607

A

0.0564

0.4514

0.2804

FBXO32

intronic

rs12289262

11

12,894,758

T

0.0560

0.3986

0.2336

TEAD1

intronic

rs4937523

11

130,347,190

T

0.0558

0.2937

0.4626

ADAMTS15

intronic

rs10807768

7

13,662,014

A

0.0554

0.3169

0.1651

rs976272

14

61,449,328

A

0.0551

0.4897

0.3178

SLC38A6

coding

rs13027801

2

143,602,503

C

0.0551

0.2862

0.4533

rs17701834

19

22,121,458

G

0.0549

0.2172

0.08879

rs7193843

16

54,677,292

G

0.0548

0.1448

0.285

rs7097885

10

16,506,501

C

0.0542

0.2832

0.4486

PTER

intronic

rs2791398

1

245,965,551

G

0.0540

0.05944

0.1651

SMYD3

intronic

rs10486802

7

39,723,768

A

0.0531

0.1884

0.07009

RALA

intronic

rs8031676

15

96,910,440

C

0.0529

0.4306

0.2664

rs7186479

16

82,602,736

C

0.0527

0.2517

0.1168

rs6054383

20

6,584,604

T

0.0526

0.3986

0.2383

rs4460308

7

104,420,060

C

0.0521

0.1866

0.07009

LHFPL3

intronic

rs3775779

4

70,709,207

A

0.0520

0.476

0.3551

SULT1E1

intronic

rs9375877

6

132,690,239

G

0.0517

0.4862

0.3458

MOXD1

intronic

rs2180691

20

54,964,361

A

0.0517

0.45

0.2857

AURKA

intronic

rs7778955

7

39,740,487

G

0.0517

0.1438

0.04206

RALA

intronic

rs4608114

12

92,384,658

A

0.0517

0.4366

0.2736

C12orf79

intronic

rs6946733

7

106,670,288

A

0.0514

0.4281

0.2664

rs816650

10

601,089

T

0.0514

0.114

0.2406

DIP2C

intronic

rs6490805

13

24,084,809

C

0.0507

0.08394

0.1981

rs17171480

7

35,585,669

A

0.0506

0.09286

0.2103

rs17015112

3

77,319,487

G

0.0505

0.4545

0.3785

ROBO2

intronic

rs573186

3

124,178,276

C

0.0503

0.2483

0.1168

KALRN

intronic

rs10752609

1

154,791,128

A

0.0501

0.3147

0.1698

KCNN3

intronic

rs1862737

16

75,281,964

C

0.0500

0.4155

0.257

BCAR1

5utr