Table 2 Frequency of the ranks of the tools based on the ROC curve for the 78 samples. Average recall, precision, and F-measure across the samples are also provided
From: Performance evaluation of indel calling tools using real short-read data
Rank | 1 | 2 | 3 | 4 | 5 | 6 | 7 | Average Recall | Average | Average |
|---|---|---|---|---|---|---|---|---|---|---|
Name | Precision | F-measure | ||||||||
GATK_UG | 0 | 0 | 0 | 0 | 62 | 16 | 0 | 0.081884 | 0.72141 | 0.14435 |
VarScan | 0 | 0 | 0 | 0 | 0 | 2 | 76 | 0.033987 | 0.717315 | 0.063333 |
Pindel | 0 | 0 | 0 | 0 | 16 | 60 | 2 | 0.068635 | 0.636704 | 0.122591 |
SAMtools | 0 | 0 | 1 | 77 | 0 | 0 | 0 | 0.160989 | 0.645108 | 0.256343 |
Dindel | 0 | 5 | 73 | 0 | 0 | 0 | 0 | 0.170076 | 0.662287 | 0.269404 |
GATK_HC | 0 | 73 | 4 | 1 | 0 | 0 | 0 | 0.181928 | 0.608907 | 0.278323 |
Platypus | 78 | 0 | 0 | 0 | 0 | 0 | 0 | 0.220391 | 0.559842 | 0.314071 |