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Table 3 Average Jaccard index for each pair of the tools (Jaccard index is computed for each pair of the tools for each human sample and then averaged across all the 78 samples)

From: Performance evaluation of indel calling tools using real short-read data

 

GATK_UG

VarScan

Pindel

SAMtools

Dindel

GATK_HC

Platypus

GATK_UG

1

0.35

0.30

0.34

0.32

0.35

0.28

VarScan

 

1

0.15

0.15

0.14

0.14

0.11

Pindel

  

1

0.27

0.27

0.32

0.25

SAMtools

   

1

0.73

0.60

0.56

Dindel

    

1

0.65

0.57

GATK_HC

     

1

0.64

Platypus

      

1

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Human Genomics

ISSN: 1479-7364