Haploblock and inferred haplotypes | Haplotype total frequency | Cases (HS) frequencies | Controls (HR) frequencies | P value (chi-square analysis) | P value, following 100 K permutations |
---|---|---|---|---|---|
AHR Block 1 | |||||
ACTTTC | 0.479 | 0.487 | 0.470 | 0.7288 | 1.00 |
AATTCC | 0.171 | 0.138 | 0.207 | 0.0613 | 0.5326 |
AACCTG | 0.133 | 0.165 | 0.096 | 0.0365 * | 0.3665 |
AACTTG | 0.097 | 0.094 | 0.101 | 0.8016 | 1.0000 |
GCTTTC | 0.090 | 0.071 | 0.111 | 0.1553 | 0.8236 |
AATTTC | 0.024 | 0.031 | 0.015 | 0.2781 | 0.9680 |
AHR Block 2 | |||||
GACTCAGGG | 0.243 | 0.249 | 0.237 | 0.7678 | 1.00 |
AGCTCAGGG | 0.187 | 0.174 | 0.201 | 0.464 | 1.00 |
GATTTAAGG | 0.152 | 0.175 | 0.126 | 0.17 | 0.8445 |
GGCTCAGGG | 0.119 | 0.108 | 0.132 | 0.4426 | 1.0000 |
GATCTAAGG | 0.075 | 0.066 | 0.085 | 0.4563 | 1.0000 |
GATTCTGTA | 0.071 | 0.058 | 0.086 | 0.267 | 0.9607 |
GGCTCTGGG | 0.061 | 0.049 | 0.075 | 0.2578 | 0.9456 |
GATCCAAGG | 0.033 | 0.031 | 0.035 | 0.8143 | 1.00 |
GATTCAGGA | 0.026 | 0.045 | 0.005 | 0.0109 * | 0.0786 |
GACTCAAGG | 0.012 | 0.018 | 0.005 | 0.225 | 0.9396 |
CYP1A1 | |||||
AACT | 0.623 | 0.603 | 0.646 | 0.3543 | 0.9613 |
ACCT | 0.185 | 0.192 | 0.177 | 0.6882 | 0.9998 |
GCCC | 0.107 | 0.125 | 0.086 | 0.1936 | 0.7935 |
ACTC | 0.050 | 0.040 | 0.061 | 0.3355 | 0.9493 |
ACCC | 0.036 | 0.040 | 0.030 | 0.5845 | 0.9975 |
CYP1A2 | |||||
GAT | 0.602 | 0.562 | 0.646 | 0.0787 | 0.4736 |
GCC | 0.280 | 0.277 | 0.283 | 0.8902 | 1.00 |
AAC | 0.062 | 0.089 | 0.030 | 0.0119 * | 0.1239 |
GAC | 0.057 | 0.071 | 0.040 | 0.1697 | 0.7649 |
CYP1B1 Block 1 | |||||
TTGG | 0.360 | 0.364 | 0.357 | 0.8781 | 1.00 |
GTAC | 0.261 | 0.301 | 0.215 | 0.0444 * | 0.2237 |
TTAC | 0.208 | 0.176 | 0.244 | 0.086 | 0.5013 |
TCGG | 0.159 | 0.138 | 0.182 | 0.2232 | 0.8763 |
CYP1B1 Block 2 | |||||
ACTCGATT | 0.256 | 0.254 | 0.258 | 0.9417 | 1.00 |
CGTCGGTC | 0.251 | 0.237 | 0.268 | 0.4627 | 1.00 |
CGCTGACC | 0.185 | 0.156 | 0.217 | 0.1078 | 0.6369 |
CGTTAGTC | 0.182 | 0.174 | 0.192 | 0.6369 | 1.00 |
CGTCAATC | 0.037 | 0.057 | 0.015 | 0.0248 | 0.1204 |
ACTTGATC | 0.028 | 0.052 | 0.000 | 0.0011 ** | 0.0042 ** |
CGTTAATC | 0.020 | 0.024 | 0.015 | 0.5256 | 1.00 |
CGCTAGCC | 0.012 | 0.013 | 0.010 | 0.7551 | 1.00 |
ACTCGATC | 0.010 | 0.010 | 0.010 | 0.9756 | 1.00 |