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Table 1 Projects providing individual access to genomic data

From: APPLaUD: access for patients and participants to individual level uninterpreted genomic data

Project

Dates

Context

# Genomes Sequenced to date

Platform

Lab Report with Signout

Results returned

Report to Health Record

Raw Data to Participants

Accredited lab

Last updated

Harvard PGP

2005-

Research

352

WGS

No

Y Filtered Variants w/ Lit Annot

No

Yes (variants)

No

Nov 2017

BWH/Harvard MedSeq

2011-

Research

110

WGS

Yes

Monogenic, Common, PGx

Yes

FASTQ

Yes

Nov 2017

Mount Sinai HealthSeq

2012–2015

Research

40

WGS

No

Monogenic, Common, PGx

No

BAM, VCF

No

paper

Mayo “10 scientists”

2012–2014

Research

10

WES

No

Monogenic

No

Yes

No

paper

Institute for Systems Biology (ISB) Pioneer 100

2014

Research

108

WGS

No

Monogenic, Common, PGx

No

BAM, VCF

No

paper

BWH/BCH/Harvard BabySeq Project

2015–

Research

160

WGS

Yes

Monogenic, PGx

Yes

FASTQ

Yes

Nov 2017

Nevada Institute of Personalized Medicine

2015–

Research

0

WES

Yes

Monogenic, PGx

No

BAM, VCF

No

paper

NYGC Seeq.io

2016-

Research

~500

WGS (ultra low coverage)

No

ancestry, microbiome

No

BAM

No

Feb 2017

NIH All of Us

2017-

Research

0

WGS

?

?

?

?

?

Nov 2017

100,000 Genomes (UK)

2015-

Research

44,633

WGS

Yes

Monogenic, PGx

Yes

Yesa

Yes

Jan 2018

  1. Compiled as web site: Bobe, Jason. “sharing-genome-studies,” online: <http://blog.jasonbobe.net/sharing-genome-studies/>
  2. aDoes not routinely provide access to BAM of VCF files, but participants are allowed to view the files on-site