Table 2 Distance-based methods of population structure analysis
From: Nonparametric approaches for population structure analysis
Reference | Clustering | Tool/package |
|---|---|---|
Gao at el.(2007) [44] | Ward’s minimum variance algorithm | AWclust [84]: R package |
Bouaziz at el. (2012) [43] | Spectral clustering (GMM) | SHIPS [85]: R package |
Neuditschko at el.(2012) [63] | Super paramagnetic clustering (SPC) | NETVIEW [86]: MATLAB |
Limpiti at el. (2014) [64] | Neighbor-joining (NJ) tree-based clustering | iNJclust [87]: C++ |