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Table 3 Haplotype frequencies of the three tag SNPs within PRKCD

From: Genetic association of PRKCD and CARD9 polymorphisms with Vogt–Koyanagi–Harada disease in the Chinese Han population

Haplotypea

Case (freq)b

Control (freq)b

χ2

Pearson’s P

Pc value

Odds ratio [95%]

A C A

58.74 (0.032)

53.61 (0.031)

0.084

0.772

NS

1.057 [0.726–1.540]

A C G

1295.28 (0.714)

1208.84 (0.693)

2.170

0.141

NS

1.116 [0.964–1.292]

A T G

69.95 (0.039)

110.55 (0.063)

11.306

7.77 × 10–4

3.11 × 10–3

0.594 [0.437–0.807]

G C A

365.13 (0.201)

350.25 (0.201)

0.004

0.951

NS

1.005 [0.853–1.185]

  1. aThe sequence of the PRKCD tag SNPs (rs2306572, rs74437127, rs45596236)
  2. bThe frequencies of haplotype were calculated using SHEsis online platform. Haplotypes were selected with minor frequency greater than 0.03
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Human Genomics

ISSN: 1479-7364