Table 1 List of qRT-PCR primers used in the study
From: CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes
Target gene name | Forward primer | Reverse primer |
|---|---|---|
RP11-146N23.4 | TGTTTTGTCTCCGGTGTTCCA | ATAAGGCCAGGTGCGGTG |
RP11-513M16.8 | TATCTGCGCCTTAACCAGACC | AATGCAAGCTCTTTGTTGGCA |
RP11-77K12.9 | CCATGAAAGTCGGCCCAAGA | GCGTAGGGTCACACTCTTCC |
KRT18P62 | GCCTTCATCGTTCTGCACAC | CATGGATGTCGCTCCTCACA |
AP000487.5 | GAGCCTCTTCATCTCTCCATCC | CACGCATGTGGCCCTTTCT |
RP11-252K23.1 | GACCAACGTTTCTTGGCTTGA | GCTGGGACTCAGAAGTTGCTT |
RP11-77K12.5 / TMEM231P1 | AGGCAGAGCCATGAAACTCC | CACCCAGGCGAACTTTACCA |
WBP1LP2 | TACAGTGACTTCCAGCTACGC | CTTGGGGGTCTTGTGATGCT |
ADORA2A-AS1 | GCACCACATGCTTGTCTACGA | ATAGAGTCAGGGTTCCAGGCA |
SNORD56 | ATGTCAATAGTTTTCATCAACAGCA | CCACTCAGACCCAAAGTATCGAC |
RPL10AP1 | CCCACGAATCCTCGGCATAG | TGCACAAGCTCATCGTCTGT |
SUMO2P17 | TGAGGTAGATCAGATTCCCATTC | TATCTTCATCCTCCATTTCCAACT |
HIF1AP1 | TGGAACATTATTAACAGCAGCCAG | TTGCATTCTTTTACACGTTTCTAGG |
POM121L9P | CCAGCATCTTATTAGAGGACGGAA | TCCCTGAGGACTCTAGCACG |
RP11-98F14.12 | CCTGGATGCAGGCATGCTAA | GACCTGACCTGGCACAGTTG |
OR7E7P | ATGGTGTAGTGGCGTCAGTG | CTCCGCAGGGCACTTTGTAT |
RP11-253E3.3 | CACCTAGTGGCTCTTTGGGG | GAGTGCCAGACACACGGTAA |
RP11-479F13.1 | TGGACATGGGATTGGTTGAGT | GTTTCTCATGCTGAGAGTGGC |
RNA5SP320 | TGAACACAAATGCGCAGAGT | AGTTCTCAGTTCATCTCCCATCC |
RP11-98F14.11 | GGAGGTCCTGTAGATCCGGT | GCTGAGAAGGCGCTGATTTT |
RPL23AP92 | GCGACCAACAAGTTCTCCCA | GCCCTGATCACGGTGTTGAT |
RP11-433J22.2-transcript201 | AACTGTAAAGGAGCTGCAGGG | GCCCTGGGGGAAAATTCTTGG |
RP11-433J22.2-transcript202 | GGCCATCTCACCACTACTCC | CACAGACAACCTGATCACCCT |
KB-1440D3.13 | ATCTCTTGTGCCCACCTTGAG | ACCTCCTTAGTTCCCAGCGT |
IGBP1P1 | GATCAGGGAATAGCCAAGGCA | CTCTGTTGGCTGCCATAGTC |
RP11-326N17.2 | AGTGCTGGTTACCAACTTTCCT | GGAGTGCCAAGATCGCATGA |
HLA-DQB1-AS1 | CAGCTTGATGCAGATGTGTGG | CATGATGGTGGCTACTGCCT |
ZMYM4-AS1 | GACATGCTGTCAAGGGTAGGA | CCAGACTGACCTTATCATTGTGGT |
HLA-DRB6 | TTGGAGCAGGCTAAGTGTGAG | TCCGTAACTGCCTGGAACTC |
Y RNA | GCTGGTAGTGAGTTATCTTG | ACAGACTAGCCAAGTGCAGTA |
RP11-624L4.1-transcript 1–4 | ACCAGAAGCACTCCAAGAACAA | GACTTTGAAGTGACAGGCTGG |
RP11-624L4.1-transcript 5 | ATGCAGCCATCAGCCTCAAT | GCTTTTGGGTTGGTTGCCTT |
RP11-624L4.1-transcript 6,9 | CCTGCTGTGGGAGTAACCAT | AAGCCCTAGAGGGACAAGGT |
RP11-624L4.1-transcript 7–8 | TGGCCTGCATCCACTGTCT | AGACCCAAGATGGCCGAATAGG |
RP11-649A18.4 | TCAAGCTCAGCTCACAGCAT | TCACCAAGCAGGTAACCAATGT |
Metazoa SRP | ATACTGATGGGGTGTCTGCA | GTCCCGAACTCCTGACCTC |
CTD-2383I20.1 | GACTCTGGCCTGAAGAAAGCA | TTGGCTCTCGGTGATCCTACT |
RPL23AP36 | GCTAAAAGGCATCCACCCCA | GGCTGCGTTTGGAACCATAG |
RP11-378J18.8 | AATGACCGCTCTGTCTTCTGT | AGGGTACAGTTGTTAGGGTAACG |
RP11-20J15.3 | CCTGTGACCCGGATCCAAC | CAAATGAACAGAAGCTGGGGG |
MIR4269 | CCTGCAGGCACAGACAGC | CCATCCCAGGCCTGACAGA |
CTC-215O4.4 | AGGCCGCATTAAGAGCATGA | GTAGCAGGTCCTGTGTGAGG |
KRT8P15 | TTCGGCAACTGCTCCTATGC | CACTGGCCCCACCATAACTT |
RP11-218C14.8 | GGGCCTGTAAATGCCTCCC | AGATGAAAGGTGCAAGGGCG |
COL3A1 | TTGAAGGAGGATGTTCCCATCT | ACAGACACATATTTGGCATGGTT |
MMP2 | TACAGGATCATTGGCTACACACC | GGTCACATCGCTCCAGACT |
TGFb1 | CAATTCCTGGCGATACCTCAG | GCACAACTCCGGTGACATCAA |
NPPA | CAACGCAGACCTGATGGATTT | AGCCCCCGCTTCTTCATTC |
NPPB | TGGAAACGTCCGGGTTACAG | CTGATCCGGTCCATCTTCCT |
MYH7 | GACCAGATGAATGAGCACCG | GGTGAGGTCGTTGACAGAAC |
MYH6 | CTCCTCCTACGCAACTGCCG | CGACACCGTCTGGAAGGATGA |
RP11-98F14.11 | TAAATTGAAGCACGCGGAGAG | GCTGACCTCTGAGAAGCGTG |
RPL23AP92 | GCGACCAACAAGTTCTCCCA | GCCCTGATCACGGTGTTGAT |
IGBP1P1 | GATCAGGGAATAGCCAAGGCA | CTCTGTTGGCTGCCATAGTC |
CTD-2383I20.1 | TGGCCTCATCAGAACCAAGAC | CAAGCTGGCCATTTTGTTTGT |
HPRT | CCTGGCGTCGTGATTAGTGAT | AGACGTTCAGTCCTGTCCATAA |