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Table 4 Risk of toxicity according to common polymorphisms of DPYS (all variants) and PPARD (variants in the 3’UTR/5’UTR)

From: The burden of rare variants in DPYS gene is a novel predictor of the risk of developing severe fluoropyrimidine-related toxicity

 

Cumulative toxicity

Acute toxicity (Cycle ≤ 1)

Yes (n = 82)

No (n = 96)

OR (95% CI)a

Yes (n = 37)

No (n = 96)

OR (95% CI)a

n

(%)

n

(%)

n

(%)

n

(%)

DPYS-rs2298840

GG

80

(97.6)

96

(100)

Ref

36

(97.3)

96

(100)

Ref

GA

2

(2.4)

0

(0.0)

–

1

(2.7)

0

(0.0)

–

 

Fisher’s exact test: P = 0.211

 

Fisher’s exact test: P = 0.278

 

DPYS-rs143004875

-/-

74

(90.2)

96

(100)

Ref

33

(89.9)

96

(100)

Ref

-/T

8

(9.8)

0

(0.0)

–

4

(10.8)

0

(0.0)

–

 

Fisher’s exact test: P = 0.002

 

Fisher’s exact test: P = 0.005

 

PPARD-rs2016520

CC

28

(34.2)

59

(61.5)

Ref

8

(21.6)

59

(61.5)

Ref

CT

22

(26.8)

18

(18.8)

2.60 (1.14–5.87)

14

(37.8)

18

(18.8)

6.54 (2.16–19.80)

TT

32

(39.0)

19

(19.8)

3.54 (1.66–7.56)

15

(40.5)

19

(19.8)

5.96 (2.06–17.20)

 

Fisher’s exact test: P = 0.001

 

Fisher’s exact test: P = 0.0001

 

PPARD-rs9658170

GG

80

(97.6)

93

(96.9)

Ref

36

(97.3)

93

(96.9)

Ref

GA

2

(2.4)

3

(3.1)

0.52 (0.07–4.09)

1

(2.7)

3

(3.1)

0.37 (0.03–5.05)

 

Fisher’s exact test: P = 1.000

 

Fisher’s exact test: P = 1.000

 

PPARD-rs9658167

GG

79

(96.3)

93

(96.9)

Ref

35

(94.6)

93

(96.9)

Ref

GA

3

(3.7)

3

(3.1)

1.75 (0.32–9.43)

2

(5.4)

3

(3.1)

3.57 (0.49–26.19)

 

Fisher’s exact test: P = 1.000

 

Fisher’s exact test: P = 0.618

 
  1. P value < 0.05 is evidenced in bold
  2. aOdds ratio (OR) and corresponding 95% confidence intervals (CI) were estimated from multinomial regression model, adjusting for sex, age, cancer site, treatment setting, and fluoropyrimidines