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Table 1 Characterization of the studies selected for bioinformatic analysis

From: Gene expression analysis reveals diabetes-related gene signatures

Study

Dataset

Human pancreatic islets samples

Sample isolation method

Protocol design

Total n°

Type

Doi: https://doi.org/10.1038/s42255-021-00420-9

GSE164416

57

18 ND, 39 T2D

Laser capture microdissection

SMART-seq

Illumina Hiseq 2500 or 500

Doi: https://doi.org/10.1074/jbc.M110.200295

GSE25724

13

7 ND, 6 T2D

Collagenase digestion followed by density gradient purification

HG- U133A Affymetrix chips

Doi: https://doi.org/10.1371/journal.pone.0011499

GSE20966

20

10 ND, 10 T2D

Laser capture microdissection

DNA-Chip Analyzer

Doi: https://doi.org/10.1007/s00125-017-4500-3

GSE76894

103

84 ND, 19 T2D

Enzymatic digestion or laser capture microdissection

Affymetrix Human Genome U133 Plus 2.0 Array

Doi: https://doi.org/10.1101/gr.212720.116

GSE86473

8

5 ND, 3 T2D

Cultured and isolated via C1 integrated fluidic circuit

SMART-seq2

Illumina NextSeq500

Doi: https://doi.org/10.1016/j.cmet.2020.04.005

GSE124742

6

3 ND, 3 T1D

Patch-seq and FACS

SMART-seq2

Illumina NextSeq500 or Novaseq platform

  1. ND individuals without diabetes, T2D individuals with type 2 diabetes, T1D individuals with type 1 diabetes, FACS fluorescence-activating cell sorting