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Table 2 Human genes identified as having experienced a human lineage-specific increase in copy number and which harbour mutations causing, or associated with, inherited disease

From: Exploring the potential relevance of human-specific genes to complex disease

Gene

symbol

Gene name

Chrom.

loc.

Disease-associated

mutation (DM)

HGMD

accession

No.

HGMD

entry

tag

dbSNP

No.

Associated disease

state

Reference

No.

AQP7

Aquaporin 7

9p13.3

Missense (Gly264Val)

CM023765

DP

rs62542743

No exercise-induced

glycerol increase,

association with

[33]

CDH12

Cadherin 12, type 2

5p14.3

Missense (Val68Met)

CM067358

DP

rs4371716

Lung cancer

susceptibility,

association with

[34]

CHRFAM7A

CHRNA7 (cholinergic

nicotinic acetylcholine

receptor, alpha 7 subunit,

exons 5-10) and FAM7A

(family with sequence

similarity 7A, exons A-E)

fusion

15q13.2

Micro-deletion (coding

region)

CD025514

DFP

--

P50 sensory gating

deficit, association

with

[35]

DRD5

Dopamine receptor D5

4p16.1

Nonsense (Cys335Term)

CM995180

FP

--

Dopamine receptor

D5 deficiency

[36]

FCGR1A

Fc fragment of IgG, high

affinity Ia, receptor

1q21.2

Nonsense (Arg92Term)

CM950456

DM

--

IgG receptor I,

phagocytic, deficiency

[37]

GTF2IRD2

General transcription factor 2-I repeat domain-containing protein 2

7q11.23

Complete gene deletion

CG044469

DM

--

Williams-Beuren

syndrome features

[38]

NAIP

NLR family, apoptosis

inhibitory protein

5q13.2

Complete gene deletion

Partial gene deletion

CG952277

CG952278

DM

DM

--

Spinal muscular

atrophy

[39]

NCF1

Neutrophil cytosolic factor 1

7q11.23

Nonsense (Gln91Term)

CM065336

DM

--

Chronic

granulomatous

disease

[40]

OCLN

Occludin

5q13.2

Missense (Phe219Ser)

CM105655

DM

--

Band-like calcification,

simplified gyration

and polymicrogyria

[41]

  1. The nine genes listed were taken from a total of 27 human genes identified as having experienced a human lineage-specific increase in copy number [13, 30–32].
  2. Abbreviations: Chrom. loc., chromosomal localisation; dbSNP, the Single Nucleotide Polymorphism database; DP, disease-associated polymorphism in statistically significant association with a particular disease state but lacking experimental evidence of functionality; FP, functional polymorphism.